affy - Methods for Affymetrix Oligonucleotide Arrays
The package contains functions for exploratory oligonucleotide array analysis. The dependence on tkWidgets only concerns few convenience functions. 'affy' is fully functional without it.
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microarrayonechannelpreprocessing
12.66 score 140 dependents 2.3k scripts 15k downloadsbumphunter - Bump Hunter
Tools for finding bumps in genomic data
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dnamethylationepigeneticsinfrastructuremultiplecomparisonimmunooncology
11.99 score 18 stars 52 dependents 224 scripts 7.3k downloadsaffydata - Affymetrix Data for Demonstration Purpose
Example datasets of a slightly large size. They represent 'real world examples', unlike the artificial examples included in the package affy.
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experimentdatatissuemicroarraydatatissuemicroarraydatadatapkg
6.85 score 2 dependents 234 scriptsaffycomp - Graphics Toolbox for Assessment of Affymetrix Expression Measures
The package contains functions that can be used to compare expression measures for Affymetrix Oligonucleotide Arrays.
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onechannelmicroarraypreprocessing
6.23 score 28 scripts 764 downloadsSpikeInSubset - Part of Affymetrix's Spike-In Experiment Data
Includes probe-level and expression data for the HGU133 and HGU95 spike-in experiments
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experimentdatamicroarraydatadatapkg
4.79 score 103 scriptsSpikeIn - Affymetrix Spike-In Experiment Data
Contains the HGU133 and HGU95 spikein experiment data.
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experimentdatamicroarraydatadatapkg
4.45 score 56 scriptsaffycompData - affycomp data
Data needed by the affycomp package.
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microarraydatadatapkg
3.74 score 11 scriptsAmpAffyExample - Example of Amplified Data
Six arrays. Three from amplified RNA, three from the typical procedure.
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experimentdatamicroarraydatadatapkg
3.70 score 3 scripts